[BioPython] Entrez.efetch
Stephan
stephan80 at mac.com
Wed Oct 8 14:00:31 UTC 2008
>Stephan - when you say manually, do you mean via a web browser? If so
>it is likely to be using a subtly different URL, which might explain
>the NCBI generating slightly different data on the fly. Either way,
>this ACCESSION line difference shouldn't trigger the "Premature end of
>file in sequence data" error in the GenBank parser.
Thanks, that must be it!
Now I guess everything is solved, closing the handle makes my code run properly and the download-from-NCBI-webpage-issue explains the difference in line 3.
>Adding this to the UndoHandle seems a sensible improvement - but I
>don't see how it can affect Stephan's script.
There I agree, thanks anyway, Brad.
Regards,
Stephan
More information about the Biopython
mailing list