[BioPython] Module for ace assembly format
Bruno Santos
bsantos at biocant.pt
Tue Mar 25 17:32:35 UTC 2008
The ACE file in my case is the one produced by an assembly of a newer
generation of sequencer machines, more precisely from the assembler of GS
FLX from Roche 454Life Sciences, and it is working perfectly. So I will try
to write some documentation during this week and then I contact you to know
how to upload the file so it can be used in the cookbook.
Thank you for your help.
Bruno Santos
-----Mensagem original-----
De: Peter Cock [mailto:p.j.a.cock at googlemail.com]
Enviada: terça-feira, 25 de Março de 2008 14:35
Para: Bruno Santos
Cc: biopython at biopython.org
Assunto: Re: [BioPython] Module for ace assembly format
On Tue, Mar 25, 2008 at 2:23 PM, Bruno Santos <bsantos at biocant.pt> wrote:
> Hi,
>
> I'm currently working in an assembly project and I need to read some
files
> in ace assembly format, my question is if biopython have any module to do
> this. I have done a search in google and I found some references to a
> bioperl module, but in the biopython website I didn't find any
information
> about this format.
Hi Bruno,
Have a look at the Bio.Sequencing.Ace module for ACE files output by
PHRAP. We don't seem to have anything in the main tutorial on this,
so if you would like to write a short piece for the "cookbook" chapter
that would be helpful
Peter
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