[BioPython] sc_match and sc_mismatch are empty.

[Peter]

Hi Sebastian,

That sounds like a bug - could file this issue on Bugzilla please?

You could also try this with the example Tests/Blast/xbt002.xml in our
unit tests from Blast 2.2.12 just to see if the XML format has
changed.

Peter

On Mon, Mar 31, 2008 at 7:26 AM, Sebastian Bassi <sbassi at gmail.com> wrote:
> sc_match and sc_mismatch are empty when there should be: 1 and -3.
>
>  >>> fr=NCBIXML.parse(open(f_in)).next()
>  >>> fr.version
>  u'2.2.17'
>  >>> fr.application
>  u'BLASTN'
>  >>> fr.expect
>  u'10'
>  >>> fr.sc_match
>  >>> fr.sc_mismatch
>
>  The xml file is here:
>  http://www.pastecode.com.ar/f7a880f5a
>  (click here to download: http://www.pastecode.com.ar/pastebin.php?dl=f7a880f5a)
>