[BioPython] Sequence from Fasta
Stefanie Lück
lueck at ipk-gatersleben.de
Tue Jul 1 07:40:38 UTC 2008
--> Peter wrote:
> from Bio import SeqIO
> handle = open("ls_orchid.fasta")
> for seq_record in SeqIO.parse(handle, "fasta") :
> print seq_record.id
> print seq_record.seq.tostring()
> print len(seq_record.seq)
> handle.close()
This works! Thanks!
--> Giovanni wrote:
>Bioperl's SeqIO has support for a 'tab sequence format' which is
>similar to this[1].
>Maybe it could be useful in the future to add support for such a
>format in biopython.
It's a very good idea because I was suprised that it dosen't work. I
excpected it.
Regards
Stefanie
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