[BioPython] FeatureLocation

Timothy Wu 2huggie at gmail.com
Tue Apr 15 10:30:09 UTC 2008


Hi,
I'm trying to access locations in a Genbank file like this:

mRNA            join(5172..5189,6254..6277,6744..6851,7266..7321,
                     8515..8749,10663..10826,11626..11807,12784..12879,
                     16701..17002,18265..18330,20541..20678,21188..21334,
                     23789..23873,24587..24653,26071..26197,31165..31341,
                     32922..33089,35124..35304,39185..39305,39545..39680,
                     40530..40749,40901..41045,43199..43355,44727..44926,
                     46662..46788,48405..48506,49040..49183,50001..50159,
                     51315..51481,54580..54774,56455..56746)

I intend to get all the positions. However as it stands, it looks to me like
only the starting and ending position is supported in the FeatureLocation
class. Is there a way to obtain the coordinates?

Timothy

Timothy



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