[BioPython] sequence logo with biopython

[Peter]

bartek wilczynski wrote:
> I've looked into it, and found a way to add this functionality to biopython.
> 
> The diff file attached introduces a method .weblogo("filename.png") to the
> Bio.AlignAce.Motif class. It is relatively easy to modify the method to be a
> standalone function which takes a fasta file as input.
> 
> Is it a right time to submit things like this to cvs? I can do that, but I do
> not want to mess up the (soon to be available) new release. 

Its a very small change, but lets see what Michiel says for the timing.

It might be nice to expose all the options to the end user, possibly as 
handled in the Bio/Blast/NCBIWWW.py qblast() function, or using **keywds 
as in Bio/Blast/NCBIStandalone.py  blastall() etc.

Peter