[BioPython] Taxon/organism/source in Biopython
Peter
biopython at maubp.freeserve.co.uk
Mon Nov 12 10:16:07 UTC 2007
Eric Gibert wrote:
> I find out one answer to my question: in BioSQL/Loader.py (Biopython version
> 1.44), inside the function _load_bioentry_table, there is a *commented* call
> to
>
> # taxon_id = self._get_taxon_id(record)
>
> I uncommented it and also modified the "INSERT INTO bioentry" statement
> slightly below to include the taxon_id column and value.
See bug 1921, where this was done as a work around for a zero taxon id.
Clearly we should revisit this issue and fix this properly:
http://bugzilla.open-bio.org/show_bug.cgi?id=1921
Peter
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