[BioPython] error on insert new sequences from GenBank: no annotations saved in BioSQL database
Peter
biopython at maubp.freeserve.co.uk
Thu Nov 8 19:18:47 UTC 2007
Eric Gibert wrote:
> Once I look in the table bioentry_qualifier_value
>
> * 20 records for a Sequence imported by BioJava
> * 1 only for a Sequence inserted by BioPython: the date which should be inserted by "_load_bioentry_date" in BioSQL/Loader.py
>
> Quite a few annotations missing, no?
>
> Any idea?
So Biopython is recording nothing in table bioentry_qualifier_value
(apart from the date), but is recording other essential things (in other
tables) like the sequence itself?
Could you double check your schema, as from the issue I filed as bug
2394 based on your earlier email, your schema doesn't seem to be up to date:
http://bugzilla.open-bio.org/show_bug.cgi?id=2394
Peter
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