[BioPython] small "bug" correction in package BioSql
Peter
biopython at maubp.freeserve.co.uk
Thu Nov 8 11:40:00 UTC 2007
Eric Gibert wrote:
> Dear all,
>
> In BioSeq/BioSeq.py, in the class DBSeq definition, we have the
> function:
>
> ...
>
> please note my correction: force moltype to be turn in lower case as
> my database has upper case value! this raises the "Unknown moltype"
> error.
Hi Eric, I've made your suggested change in CVS,
biopython/BioSQL/BioSeq.py revision 1.13, thank you.
I would encourage you to investigate why some of the "alphabet" fields
in the biosequence table are in upper case. There could be a bug
elsewhere which is writing these entries with the wrong alphabet. Is
this affecting all entries, or just some?
Peter
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