[BioPython] Bug 2393 in bugzilla for theBio.GenBank.NCBIDictionary code

[Michiel De Hoon]

It's probably a good idea to make a new Biopython release in the near future,
after fixing this bug.

--Michiel.

Michiel de Hoon
Center for Computational Biology and Bioinformatics
Columbia University
1150 St Nicholas Avenue
New York, NY 10032



-----Original Message-----
From: biopython-bounces at lists.open-bio.org on behalf of Peter
Sent: Fri 11/16/2007 4:38 PM
To: Matthew Abravanel
Cc: biopython at lists.open-bio.org
Subject: Re: [BioPython] Bug 2393 in bugzilla for
theBio.GenBank.NCBIDictionary code
 
On Nov 16, 2007 9:26 PM, Matthew Abravanel <vmatthewa at gmail.com> wrote:
> Hi all,
>
> I was wondering not being familiar with the bugzilla feature, if  I wanted
> to fix Bug 2393 there seems to be a patch with the .py extention that was
> created for it. Do I need to download that file or type it into my existing
> code or something like that?  Please excuse my ignorence. Thanks.
>
>  Matthew

http://bugzilla.open-bio.org/show_bug.cgi?id=2393
Right now, Bug 2393 has two attachments:
* Michiel's patch - which makes some drastic changes
* My suggested test case (a python file)
Ignore these for now.

Instead, I suggest you make the "quick-and-dirty" one line change described
in comment 2, which has since been checked into CVS (comment 5)
http://bugzilla.open-bio.org/show_bug.cgi?id=2393#c2
http://bugzilla.open-bio.org/show_bug.cgi?id=2393#c5

Or just download the latest Bio/GenBank/__init__.py from the web
interface to CVS:

http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/GenBank/__
init__.py?cvsroot=biopython

Back up your old file, and replace it with the new one (assuming you
have sufficient admin rights).

Peter
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