[BioPython] Problem with blastx output parsing =~

[Italo Maia]

For the use of the files, i'll ask the girl that runs the lab here, but it
probably won't be a problem! And i'll try with all my files as soon as it
works with 99.out

2007/6/13, Peter <biopython at maubp.freeserve.co.uk>:
>
> To update anyone not following bug 2090, I have updated the CVS copy of
> Bio/Blast/NCBIStandalone.py to do a better job of recent plain text
> Blast output. It can now parse the two BLASTX 2.2.15 files Italo sent me.
>
> If anyone want to try this code, you can either update your entire
> Biopython installation to CVS, or simply update the file
> Bio/Blast/NCBIStandalone.py in your python site-packages directory
> (after making a backup). You can get the latest version here:
>
>
> http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/Blast/NCBIStandalone.py?cvsroot=biopython
>
> You want the latest revision, 1.66 (the web interface is normally
> updated within the hour).
>
> Italo - please could we use those two files as test cases to include
> with Biopython? And do let me know if any of your other 24,000 examples
> fails.
>
> Peter
>
> P.S. Biopython can currently only cope with single query plain text
> output from Blast. We recommend using the XML output.
>
>


-- 
"A arrogância é a arma dos fracos."

===========================
Italo Moreira Campelo Maia
Ciência da Computação - UECE
Desenvolvedor WEB
Programador Java, Python

Meu blog ^^ http://eusouolobomal.blogspot.com/

===========================