[BioPython] Problem with blastx output parsing =~

[Peter]

To update anyone not following bug 2090, I have updated the CVS copy of 
Bio/Blast/NCBIStandalone.py to do a better job of recent plain text 
Blast output. It can now parse the two BLASTX 2.2.15 files Italo sent me.

If anyone want to try this code, you can either update your entire 
Biopython installation to CVS, or simply update the file 
Bio/Blast/NCBIStandalone.py in your python site-packages directory 
(after making a backup). You can get the latest version here:

http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/Blast/NCBIStandalone.py?cvsroot=biopython

You want the latest revision, 1.66 (the web interface is normally 
updated within the hour).

Italo - please could we use those two files as test cases to include 
with Biopython? And do let me know if any of your other 24,000 examples 
fails.

Peter

P.S. Biopython can currently only cope with single query plain text 
output from Blast. We recommend using the XML output.