[BioPython] AttributeError: 'module' object has no attribute 'parse'
richa
richa at musc.edu
Tue Jun 12 16:31:35 UTC 2007
Hi all,
Just installed biopython on ubuntu feisty. Dependencies and package
seemed to install without a problem. Many of the test files that come
with it work fine, but the SeqIO object runs into a problem. For
example, the following code causes an error saying that the 'module'
object has no attribute 'parse'.
Is this a problem of syntax or is it an installation issue?
from Bio import SeqIO
handle = open("ls_orchid.fasta", "rU")
for record in SeqIO.parse(handle, "fasta") :
print record.id
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