[BioPython] Cluster problem keeping me from getting started
Michiel De Hoon
mdehoon at c2b2.columbia.edu
Thu Aug 30 03:59:51 UTC 2007
This was fixed in CVS. If you pick up the new Bio.Cluster source files from
here:
http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/Cluster/?c
vsroot=biopython
copy them over the corresponding files in the biopython-1.43 distribution,
and reinstall, the test should run to completion. If it doesn't, please let
me know.
--Michiel.
Michiel de Hoon
Center for Computational Biology and Bioinformatics
Columbia University
1150 St Nicholas Avenue
New York, NY 10032
-----Original Message-----
From: biopython-bounces at lists.open-bio.org on behalf of Jimmy Musselwhite
Sent: Wed 8/29/2007 11:46 PM
To: biopython at lists.open-bio.org
Subject: [BioPython] Cluster problem keeping me from getting started
Hi everyone
I'm trying to start an assignment I have using BioPython but a critical
functionality is not working for me. When I do
python run_tests.py
It "hangs" at
test_Cluster ...
and if I run test_Cluster.py by itself it does not complete properly.
I installed Cluster 3.0 from the bonsai website and then I even re-installed
PyCluster from the source there. I don't know what else could be wrong here!
I really need Cluster to work. It's pretty much the point of my assignment.
Thanks!
_______________________________________________
BioPython mailing list - BioPython at lists.open-bio.org
http://lists.open-bio.org/mailman/listinfo/biopython
More information about the Biopython
mailing list