[BioPython] Blast to genome specific databases?
Emanuel Hey
jodyhey at yahoo.com
Mon Aug 20 17:48:36 UTC 2007
NCBI has a blast form for genome specific datbases
that returns more information than does a blast to the
generic nucleotide database
http://www.ncbi.nlm.nih.gov/BLAST/
See e.g. for the human genome
http://www.ncbi.nlm.nih.gov/genome/seq/BlastGen/BlastGen.cgi?taxid=9606
I've used NCBIWWW.qblast and used biopython for stand
alone blasting, but otherwise am not that experience.
Is there a way to script a search that generates the
same results as provided by these newere genome
specific interfaces?
Thanks
Jhey
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