[BioPython] psi mi

Christof Winter winter at biotec.tu-dresden.de
Thu Aug 16 17:53:01 UTC 2007


Javier Díez wrote:
 > Hy,
 > Does anyone knows a python parser for PSI-MI format?
 > Thanks
 > Javi

Hi Javier:

I searched for one some time ago, and since I didn't find one, I wrote my own.
It's based on ElementTree:

http://effbot.org/zone/element-index.htm
http://docs.python.org/lib/module-xml.etree.ElementTree.html

It only parses some basic data from the PSIMI file, if you want to have a look 
at it, just drop me a line.

Cheers,
Christof



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