[BioPython] Cluster problem keeping me from getting started

[Michiel De Hoon]

This was fixed in CVS. If you pick up the new Bio.Cluster source files from
here:

http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/Cluster/?c
vsroot=biopython

copy them over the corresponding files in the biopython-1.43 distribution,
and reinstall, the test should run to completion. If it doesn't, please let
me know.

--Michiel.


Michiel de Hoon
Center for Computational Biology and Bioinformatics
Columbia University
1150 St Nicholas Avenue
New York, NY 10032



-----Original Message-----
From: biopython-bounces at lists.open-bio.org on behalf of Jimmy Musselwhite
Sent: Wed 8/29/2007 11:46 PM
To: biopython at lists.open-bio.org
Subject: [BioPython] Cluster problem keeping me from getting started
 
Hi everyone
I'm trying to start an assignment I have using BioPython but a critical
functionality is not working for me. When I do

python run_tests.py

It "hangs" at

test_Cluster ...

and if I run test_Cluster.py by itself it does not complete properly.

I installed Cluster 3.0 from the bonsai website and then I even re-installed
PyCluster from the source there. I don't know what else could be wrong here!
I really need Cluster to work. It's pretty much the point of my assignment.

Thanks!
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