[BioPython] qblast

[Michael S. Robeson]

I have been using qblast (blastn) for a set of sequences. However, it  
gives me _completely_ different results than if I was to use the web  
interface at NCBI (also using blastn, nr). Is anyone else having this  
problem? Am I missing something?

Can anyone help with making sure that I am using the same settings in  
qblast as with the NCBI web interface?

Also, are there any plans for implementing megablast?

-Thanks!
-Mike