[BioPython] Problem to obtain Hit length parsing with NCBIXML
Gabino Sanchez-Perez
Gabino.Sanchez-Perez at Dal.Ca
Tue Aug 14 19:57:40 EDT 2007
Hi
I'm parsing a blastp output in XML format using NCBIXML, but my problem is that
I don't know how to get the Hit length (not alignment length), even though is
defined in the parser:
def _end_Hit_len(self):
self._hit.length = int(self._value)
So in my script when I iterate
for alignment in brecord.alignments:
for hsp in alignment.hits:
it seems that is not defined and the error message is that hit.length does not
exist.
Thanks in advance
Gabino
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