[BioPython] Local Blast Output

JASON HORTIATIS jhortia1 at jhu.edu
Fri Apr 13 19:21:54 UTC 2007


I'm an undergraduate using biopython to run local blast searches and I'm trying to find out how to save the entire sequence of each protein hit directly to a file.  I have only managed to be able to print the portion of the sequence that matches the query using hsp.sbjct[0:].  My goal is to use the search results from one blast run as a database to search against for a subsequent run so a fasta file is needed for each hit of the first run.
Thanks for the help!

Jason  



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