[BioPython] help with NCBIWWW parser
Edoardo Saccenti
saccenti at cerm.unifi.it
Wed Sep 13 17:22:46 UTC 2006
Hi Folks!
I'm trying to parse the output of blast search done using the NCBIWWW
qblast.
To parse the reusults I use:
import cStringIO
blast_out = cStringIO.StringIO(blast_result)
b_parser = NCBIWWW.BlastParser()
b_record = b_parser.parse(blast_out)
as shown in the Biopython cookbook but my program fails and I get the
following warning from my editor (eric)
"The program being debugged contains an unspecified syntax error."
so I do not know how and what to look for.
I suppose NCBI changed something in the html file format.
Any idea??
ciao
edoardo
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