[BioPython] installing biopython
Thenaturenook1 at aol.com
Thenaturenook1 at aol.com
Sat Oct 21 13:35:13 UTC 2006
Hi,
I am in the process of installing BioPython on a Windows XP System. I have
been using the Windows installers throughout and following the instruction in
the PDF file. I have installed all of the compulsary pre requisite modules in
the order designated, but when i type the test code, this AttributeError
happens:
Python 2.5 (r25:51908, Sep 19 2006, 09:52:17) [MSC v.1310 32 bit (Intel)] on
win32
Type "copyright", "credits" or "license()" for more information.
****************************************************************
Personal firewall software may warn about the connection IDLE
makes to its subprocess using this computer's internal loopback
interface. This connection is not visible on any external
interface and no data is sent to or received from the Internet.
****************************************************************
IDLE 1.2
>>> from Bio.Seq import Seq
>>> from Bio.Alphabet.IUPAC import unambiguous_dna
>>> new_seq = Seq('GATCAGAAC', unambiguous_dna)
>>> new_seq[0:2]
Seq('GA', IUPACUnambiguousDNA())
>>> from Bio import Translate
>>> translator = Translate.umambiguous_dna_by_name["Standard"]
Traceback (most recent call last):
File "<pyshell#5>", line 1, in <module>
translator = Translate.umambiguous_dna_by_name["Standard"]
AttributeError: 'module' object has no attribute 'umambiguous_dna_by_name'
>>>
Can anyone help?
thanks,tim
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