[BioPython] Where'd sbjct_end go in the Bio.Blast.Record?

Michiel De Hoon mdehoon at c2b2.columbia.edu
Fri May 5 22:18:18 UTC 2006


Can you show the code that used to work and doesn't work any more?
You can probably get sbjct_end from sbjct_start and the sequence length.

--Michiel.

Michiel de Hoon
Center for Computational Biology and Bioinformatics
Columbia University
1150 St Nicholas Avenue
New York, NY 10032



-----Original Message-----
From: biopython-bounces at lists.open-bio.org on behalf of David Garfield
Sent: Fri 5/5/2006 5:00 PM
To: biopython at biopython.org
Subject: [BioPython] Where'd sbjct_end go in the Bio.Blast.Record?
 
Its been a while since I used the Bio.Blast modules, and I've been  
through one BioPython upgrade (at least) since then.
It appears in the interlude the sbjct_end and query_end in the Record  
object have gone away.  Am I totally wedged on this?  If they're  
gone, does anyone have suggestions about other ways for deriving the  
ends which are oh so useful for other tasks.


Cheers,

David
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