[BioPython] Question!!!
Christof Winter
winter at biotec.tu-dresden.de
Tue May 2 16:05:13 UTC 2006
Dear Alper,
you might want to try
print NCBIWWW.__doc__
print NCBIWWW.__file__
to first see if the doc string of the NCBIWWW module has a section that mentions qblast as
a function, and, if not, check the source code of the module (__file__ tells you the
location) if it's correct. It should contain a qblast function (line 1038 in my version of
NCBIWWW.py).
HTH,
Christof
alper soyler wrote:
> Hi all,
>
> I have a protein in fasta format in a file called 'fasta' and I am writing below script:
>
> from Bio.Blast import NCBIWWW
> result_handle = NCBIWWW.qblast('blastp', 'nr', fasta)
>
> However, it gives me the following error:
>
> Traceback (most recent call last):
> File "<stdin>", line 1, in ?
> AttributeError: 'module' object has no attribute 'qblast'
>
> Do I have something missing in my Biopython? How can I solve this problem? Thank you.
>
> Regards,
> Alper
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