[BioPython] Biopython's XMl parser fails with NCBI blast changed XML output format

Rohini Damle rohini.damle at gmail.com
Wed Jun 21 19:06:29 UTC 2006


Hi,
I am trying to parse the blast output (XML formatted, using online NCBI's
blast) I got as a result for 'short nearly exact matches' for my 50-55 short
protein sequences.
It looks like the XML format has changed and biopython's XML parser fails to
parse the blast records.
can somebody show a way to fix this thing?
Thank you
Rohini Damle



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