[BioPython] import Standalone problems

[Rohini Damle]

Hi,
I updated the NcbiStandalone.py file and then the program works fine.
Thanks.
Rohini.

On 7/13/06, Peter <biopython at maubp.freeserve.co.uk> wrote:
> Rohini Damle wrote:
> > Hi,
> > I am trying to use biopyton's xml parser to parse my blast result.
> > Because of NCBI's changed XML output, the current biopython's parser
> > fails.
> >
> > So I got an advice to run older version of blast locally and get the
> > xml out put in older version and then use current XML parser.
> > but I am getting an error
> >
> > SAXParseException: <unknown>:553:0: junk after document element
> >
> > what might be the reson?
> >
>
> Not off hand.  We would usually ask to see the problem XML file...
>
> Do you get the same problem if you run Blast by hand, saving the output
> to a file, and then trying to parse the XML file with BioPython?
>
> Also, which version of standalone blast are you using?
>
> Peter
>
>