[BioPython] E-utils on NCBI site
Srinivas Iyyer
srini_iyyer_bio at yahoo.com
Tue Jan 3 11:47:08 EST 2006
Dear group,
there are 2 questions that are important to my
research. I hope group members who have tried would
be willing to help me.
1. How do I use E-utils using python, bio-python
modules. Are there any examples?
2. here is the specific that I want to do. I am
interested in downloading all the human affymetrix
data submitted to GEO site.
for example:GSE2152_RAW_tar is the raw CEL file
package submitted to GEO by the authors. It is in the
directory:
ftp://ftp.ncbi.nih.gov/pub/geo/data/geo/raw_data/series/GSE2152/GSE2152_RAW.tar
However, checking manually for every dataset that is
submitted to ncbi is pains taking procedure. So I want
to be able to write a script that would check for
every dataset submitted to GEO. After that I want to
filter human tar files.
Has any one did this before. could you please help
me.
Thanks
Srini
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