[BioPython] answer to mail from sebastian bassi on 2005Dec31
Hans Meier
biopyte at yahoo.de
Mon Jan 2 10:34:18 EST 2006
Dear Sebastian,
I'm answering your following E-Mail from 2005 Dec 31:
> Your computer is not underpowered and the file is not so large, so it
> should not hangup. Could you provide code for us to check it? (and the
> datafile, you should upload it to a ftp/web server if the data is
> public).
Sorry, but I couldn't find out how to answer it within the thread.
Could you tell me how to do that, please?
I don't believe that the problem is specific to the file.
Anyway, the data file is
ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K12/NC_000913.gbk
But watch out. You have to substitute 5" by 5' in the field shown below.
Otherwise the file will not parse at all.
/note="2'-(5"-phosphoribosyl)-3'-dephospho-CoA
transferase; holo-citrate lyase synthase; CitG forms the
prosthetic group precursor
2'-(5"-triphosphoribosyl)-3'-dephospho-CoA which is then
transferred to apo-ACP by CitX to produce holo-ACP and
pyrophosphate;
go_process: protein modification [goid 0006464]"
Best regards, Harald
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