[BioPython] Cannot parse/convert embl formatted files

Chris Fields cjfields at uiuc.edu
Sat Aug 12 23:32:01 UTC 2006


Just so everybody knows, EMBL recently made a few major revisions to  
their sequence format. These are now corrected in Bioperl CVS and  
will be available for the next dev release (hopefully out within a  
few months).

Odd about the unbalanced quotes; is that on the Bioperl end?  I  
missed that bit...

Chris

>> No, it contains some extra annotation provided by that Italian site.
>> I managed to get it converted using bp_sreformat.pl to GenBank and
>> made biopython GenBank parser to parse it with some minor problems.
>> ...

Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign






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