[BioPython] SD/MDL file parser

Jerome PANSANEL j.pansanel at pansanel.net
Tue Sep 20 08:17:59 EDT 2005


Le Mardi 20 Septembre 2005 13:24, Noel O'Boyle a écrit :
> Hello all,

Hi !

> I've just been through the documentation and site-packages on my
> computer, and I cannot find a parser for SD (or MDL) files. This is the
> most common file format for chemical structures in databases of
> chemicals (as used by pharmaceutical companies, for example).
>
> Did I miss this parser? I know that Andrew Dalke (through PyDaylight)
> has an interest in chemistry, so I was expecting to find this parser...

You can use frowns (http://frowns.sourceforge.net/) in Python or if you need 
C++, I can send you one we have developped.

What do you need for features ?

Regards,

Jerome Pansanel

> Regards,
> Noel O'Boyle.
>
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