[BioPython] NCBIStandalone Parser problem

[edeveaud at pasteur.fr]

On Tue, Apr 26, 2005 at 05:25:59PM +0900, Michiel Jan Laurens de Hoon wrote:
> Could you try this again with Biopython version 1.40b and see if the 
> problem still occurs there? If so, could you send me the query that you are 
> using so I can replicate this error?


sorry for the long delay, but know as course finished I will have more time
to dig into the problem.

anyway I reproduced the same error with Biopython version 1.40b

if you want to check with the datas I provided a tar.gz of all the necessary
files here
<URL:http://instcard1.free.fr/biopython_test.tgz>

the tarball contains :
*) a bank containing the following 2 sequences CV793585 and 
   CV793586 taken from the genbank nc0421.flat update 

*) the generated index for this one (formatdb -p F -i test_bank)
   NB this ones may need to be rebuild

*) 2 query files 
   query_ok: a query giving some hits
   query_crash: the query that does produce '***** No hits found ******'
   and leads the parser to crahs

*) the basic python script used  
   python ./crash.py query_ok bank/test_bank
   python ./crash.py query_crash bank/test_bank


	Eric
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