[BioPython] PDB import thingy?

Iddo Friedberg idoerg at burnham.org
Tue Mar 1 20:47:28 EST 2005


Hi,

I tried this PDB import (it's part of som really old code I have), and 
got the following:

Python 2.3.3 (#2, Feb 17 2004, 11:45:40)
[GCC 3.3.2 (Mandrake Linux 10.0 3.3.2-6mdk)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
 >>> from PDBUtil import PDBUtil
Traceback (most recent call last):
  File "<stdin>", line 1, in ?
  File "/home/idoerg/soft/PDBUtil/PDBUtil.py", line 7, in ?
    from Bio.PDB.PDBParser import PDBParser
  File 
"/home/idoerg/biopy_cvs/biopython/build/lib.linux-i686-2.3/Bio/PDB/__init__.py", 
line 13, in ?
    from MMCIFParser import MMCIFParser
  File 
"/home/idoerg/biopy_cvs/biopython/build/lib.linux-i686-2.3/Bio/PDB/MMCIFParser.py", 
line 6, in ?
    from MMCIF2Dict import MMCIF2Dict
  File 
"/home/idoerg/biopy_cvs/biopython/build/lib.linux-i686-2.3/Bio/PDB/MMCIF2Dict.py", 
line 2, in ?
    import Bio.PDB.mmCIF.MMCIFlex
ImportError: No module named MMCIFlex


Curiously enough, the second import works.

 >>> from PDBUtil import PDBUtil
 >>>



Huh?

./I

-- 
Iddo Friedberg, Ph.D.
The Burnham Institute
10901 N. Torrey Pines Rd.
La Jolla, CA 92037 USA
Tel: +1 (858) 646 3100 x3516
http://ffas.ljcrf.edu/~iddo
==========================
The First Automated Protein Function Prediction SIG
Detroit, MI June 24, 2005
http://ffas.burnham.org/AFP



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