[BioPython] Problems with MMCIFlex module
Matias Saavedra
matomatias at hotmail.com
Tue Jul 5 17:54:35 EDT 2005
Thanks for taking care of my problem.
At this moment i still cant install biopython... but now i'm trying to
install biopython-1.40b using the .tar files.
when i type the installing commands python setup.py install, y receive the
following message:
[Macintosh:~/biopython-1.40b] mato% python setup.py install
running install
*** mxTextTools *** is either not installed or out of date.
This package is required for many Biopython features. Please install
it before you install Biopython.
You can find mxTextTools at
http://www.egenix.com/files/python/eGenix-mx-Extensions.html.
So i went to the egenix webpage in order to get de mxtexttools that are
necessary to biopython. And unfortunelly, i cant install the egenix base
package, because i receive the following message when i try to build it:
[Macintosh:~/egenix-mx-base-2.0.6] mato% python setup.py build
running build
running mx_autoconf
gcc -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fno-strict-aliasing
-Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic
-D_GNU_SOURCE=1 -I/usr/local/include
-I/Library/Frameworks/Python.framework/Versions/2.4/include -c _configtest.c
-o _configtest.o
unable to execute gcc: No such file or directory
failure.
removing: _configtest.c _configtest.o
gcc -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fno-strict-aliasing
-Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic
-D_GNU_SOURCE=1
-I/Library/Frameworks/Python.framework/Versions/2.4/include/python2.4
-I/usr/local/include
-I/Library/Frameworks/Python.framework/Versions/2.4/include -c _configtest.c
-o _configtest.o
unable to execute gcc: No such file or directory
failure.
removing: _configtest.c _configtest.o
running build_ext
building 'mx.DateTime.mxDateTime.mxDateTime' extension
creating build
creating build/temp.darwin-8.0.0-Power_Macintosh-2.4
creating build/temp.darwin-8.0.0-Power_Macintosh-2.4/mx
creating build/temp.darwin-8.0.0-Power_Macintosh-2.4/mx/DateTime
creating build/temp.darwin-8.0.0-Power_Macintosh-2.4/mx/DateTime/mxDateTime
creating
build/temp.darwin-8.0.0-Power_Macintosh-2.4/mx/DateTime/mxDateTime/mxDateTime
creating
build/temp.darwin-8.0.0-Power_Macintosh-2.4/mx/DateTime/mxDateTime/mxDateTime/mx
creating
build/temp.darwin-8.0.0-Power_Macintosh-2.4/mx/DateTime/mxDateTime/mxDateTime/mx/DateTime
creating
build/temp.darwin-8.0.0-Power_Macintosh-2.4/mx/DateTime/mxDateTime/mxDateTime/mx/DateTime/mxDateTime
gcc -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fno-strict-aliasing
-Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic
-DBAD_STATIC_FORWARD=1 -UHAVE_STRPTIME -Imx/DateTime/mxDateTime
-I/Library/Frameworks/Python.framework/Versions/2.4/include/python2.4
-I/usr/local/include
-I/Library/Frameworks/Python.framework/Versions/2.4/include -c
mx/DateTime/mxDateTime/mxDateTime.c -o
build/temp.darwin-8.0.0-Power_Macintosh-2.4/mx/DateTime/mxDateTime/mxDateTime/mx/DateTime/mxDateTime/mxDateTime.o
unable to execute gcc: No such file or directory
error: command 'gcc' failed with exit status 1
So i0m stucked at this level... as i cant install mxTextTools i cant install
biopython neither.
The latter problem seems to be related to GCC or C compilers, but i dont
understand it very well.
Can you help me with that?
Thanks a lot
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