[BioPython] Formating files for Clustalw

[Jerome PANSANEL]

Le Mardi 23 Août 2005 21:42, meames at itsa.ucsf.edu a écrit :
> Hi all
>
...

Hi,

1. clustalw -infile=file_to_align -outfile=test.aln is working very well by me 
(clustalw 1.83)

2. In your code, how looks your test.aln file ?
Is it like an clustalw file ?
Is your 'test.aln' file like this :

CLUSTAL W (1.83) multiple sequence alignment


sptrembl|Q00647|Q00647           
MGHSRRPAGGEKKSRFGRSKAAADVGDGRQAGGKPQVRKAVFESTK
KKEI
gi|17507983|ref|NP_492393.1|      
MAFHWQSK------------------------------------VNVQHV
                                  
*..  :.                                     .: :.:

sptrembl|Q00647|Q00647            
GVSDLTLLSKISNEAINDNLKLRFQHDEIYTYIGHVLVSVNPFRDLGIYT
gi|17507983|ref|NP_492393.1|      
GVDDMVLLPKLTEQSIVENLKKRLQANSIFTYIGPVLISVNPFKQMPYFT
                                  **.*:.**.*:::::* :*** *:* :.*:**** 
**:*****:::  :*

...

Jerome Pansanel
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