[BioPython] similarity and string alignments

[Iddo]

Hi Geraci,

Local & global alignments are implemented in Bio.pairwise2, you might 
want to check that. If you have any additional funcitonality to add, 
which you can wrap in Python, that would be great, of course!!

Cheers,

Iddo


Geraci Filippo wrote:

> Hey,
> I'm working in DNA fragment assembly. Using BioPython I've not found a 
> librery implementing similarity and string alignments.
>
> I wrote a C library to provide local,global and semiglobal similarity 
> and build each possible string alignment and I wrote the extension for 
> python.
>
> I'd like to know if these functions already exist and I lose my time 
> or otherwise how to contribute to biopython project
>
> regards
>
> Filippo
>
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>


-- 
Iddo Friedberg, Ph.D.
The Burnham Institute
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http://ffas.ljcrf.edu/~iddo