[BioPython] about GenBank module...
Ka-Young An
kayounga at andrew.cmu.edu
Sat Jan 24 10:10:10 EST 2004
Hi,
I have very simple problem,,,
When I use the GenBank module,,the following code doesn't work...
(the otherthing like swissport or pubmed is working well..)
I think this sourse don't have any syntax problem,,
so..pleas let me know..what is the problem...
____________________________________________________________
(line1) from Bio import GenBank
(line2)
(line3) gi_list = GenBank.search_for("Opuntia AND rpl16")
_____________________________________________________________
There are some error message like this....
____________________________________________________________________
Traceback (most recent call last):
File "C:\Documents and Settings\kayounga\Desktop\lovepython\a.py", line
3, in ?
gi_list = GenBank.search_for("Opuntia AND rpl16")
File "C:\Python22\lib\site-packages\Bio\GenBank\__init__.py", line 1609,
in search_for
parser.feed(handle.read())
File "C:\Python22\lib\sgmllib.py", line 95, in feed
self.goahead(0)
File "C:\Python22\lib\sgmllib.py", line 129, in goahead
k = self.parse_starttag(i)
File "C:\Python22\lib\sgmllib.py", line 290, in parse_starttag
self.finish_starttag(tag, attrs)
File "C:\Python22\lib\sgmllib.py", line 328, in finish_starttag
self.handle_starttag(tag, method, attrs)
File "C:\Python22\lib\sgmllib.py", line 364, in handle_starttag
method(attrs)
File "C:\Python22\lib\site-packages\Bio\GenBank\__init__.py", line 1600,
in start_a
for name, value in params:
ValueError: unpack list of wrong size
__________________________________________________________________________
Thanks~~
from ky
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