[BioPython] parsing error in Bio.Sequencing.Ace

[Hyung-Yong Kim]

Hi Frank Kauff

Thanks for your concern.

> It does! In theory, the parser should not run into this problem - are
> you using the newest ace.py from cvs? The ace parser has been updated
> after the recent 'official' release of biopython. Anyway, please send me
> your input file so I can have a closer look why this happens and I can
> fix it.

There are no problems parsing them when I use newest ace.py from cvs.
I used v1.3(in CVS) and the newest is v1.5.
I could see their diffs in
http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/Sequencing/Ace.py.diff?r1=1.3&r2=1.5&cvsroot=biopython

But, I also modified ace.py because Iterator class does not support __iter__. 
I want to know why __iter__ is depreciated although it is very convenient.

Hyung-Yong Kim



> Frank Kauff
> Dept. of Biology
> Duke University
> Box 90338
> Durham, NC 27708
> USA

> Phone 919-660-7382
> Fax 919-660-7293


Hyung-Yong Kim
---------------------------------
National Livestock Research Institute (Korea)
Division of Animal Genomics & Bioinformatics
http://bioinfo.sarang.net