[BioPython] Connecting to Genbank

Peter Bienstman Peter.Bienstman at UGent.be
Wed Nov 26 02:23:44 EST 2003


On Wednesday 26 November 2003 02:08, Glen Spraggon wrote:
> Hi,
>       I have just resurrected an old script ( about six months old) that
> queries Genbank for sequence information using the gi number. The scrips
> gets the gi information by calling
>
> Gi_list=Genbank.search_for("gi|number")
>
> Then sequence information is extracted from Gi_list. The problem is that
> although this used to work it now it doesn't. It doesn't throw an
> exception either just keeps going. Has something changed with Genbank.

Could you send us the accession number where the problem occurs? Otherwise 
it's hard to track down what happens ;-)

Cheers,

Peter

-- 
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Peter Bienstman
Ghent University, Dep. of Information Technology
Sint-Pietersnieuwstraat 41, B-9000 Gent, Belgium
tel: +32 9 264 34 45, fax: +32 9 264 35 93
WWW: http://photonics.intec.UGent.be
email: Peter.Bienstman at UGent.be
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