[BioPython] connecting to biomoby

[Catherine Letondal]

Cary Miller wrote:
> Hi all,
>   I am attempting to contact biomoby with xmlrpclib and SOAPpy.  

BTW, has someone started to develop a biomoby python client? 

> It's not 
> totally clear where the server lives so I have tried 3 urls.
> http://mobycentral.cbr.nrc.ca/MOBY/Central
> http://mobycentral.cbr.nrc.ca/cgi-bin/MOBY05/mobycentral.pl
> http://192.168.1.9/cgi-bin/MOBY-Central.pl
> Each of these seems to connect with my client but then fails when the 
> request is sent.  Do I have the wrong url, wrong function call or what?
> 
> >>> import xmlrpclib
> >>> url = "http://mobycentral.cbr.nrc.ca/MOBY/Central"
> >>> server = xmlrpclib.ServerProxy(url)
> >>> foo = server.retrieveServiceNames()
> Traceback (most recent call last):
>   File "<stdin>", line 1, in ?
>   File "/usr/local/lib/python2.3/xmlrpclib.py", line 1029, in __call__
>     return self.__send(self.__name, args)
>   File "/usr/local/lib/python2.3/xmlrpclib.py", line 1316, in __request
>     verbose=self.__verbose
>   File "/usr/local/lib/python2.3/xmlrpclib.py", line 1070, in request
>     headers
> xmlrpclib.ProtocolError: <ProtocolError for 
> mobycentral.cbr.nrc.ca/MOBY/Central: 404 Not Found>
> 
> 
> >>> from SOAPpy import SOAPProxy
> >>> url = "http://mobycentral.cbr.nrc.ca/cgi-bin/MOBY05/mobycentral.pl"
> >>> server = SOAPProxy(url)
> >>> foo = server.retrieveServiceNames()
> <Fault SOAP-ENV:Client: Denied access to method (retrieveServiceNames) in 
> class
> (main) at /usr/local/lib/perl5/site_perl/5.8.0/SOAP/Lite.pm line 2128.
> >
> Traceback (most recent call last):
>   File "<stdin>", line 1, in ?
>   File "/usr/local/lib/python2.3/site-packages/SOAPpy/Client.py", line 
> 363, in __call__
>     return self.__r_call(*args, **kw)
>   File "/usr/local/lib/python2.3/site-packages/SOAPpy/Client.py", line 
> 385, in __r_call
>     self.__hd, self.__ma)
>   File "/usr/local/lib/python2.3/site-packages/SOAPpy/Client.py", line 
> 307, in __call
>     raise p
> SOAPpy.Types.faultType: <Fault SOAP-ENV:Client: Denied access to method 
> (retrieveServiceNames) in class (main) at 
> /usr/local/lib/perl5/site_perl/5.8.0/SOAP/Lite.pm line 2128.
> >
> >>>
> 
> ??????????
> Thanks,
>    cam
> 
> -- 
> //=\ Cary Miller                                    //=\  
> \=// Center for Computational Pharmacology          \=// 
> //=\ University of Colorado Health Sciences Center  //=\  
> \=// http://compbio.uchsc.edu/Hunter_lab/Miller     \=// 
> //=\ (303) 315-1584                                 //=\  
> 
> 
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--
Catherine Letondal -- Pasteur Institute Computing Center