[BioPython] GenBank records again
Jeffrey Chang
jchang at jeffchang.com
Thu Feb 27 10:09:02 EST 2003
Committed. Thanks, Peter!
Jinling, please download the file
biopython/Bio/GenBank/genbank_format.py from the CVS and replace the
one currently installed with your Biopython. Please wait 15 minutes,
though, because I have just checked it in, and it takes some time for
the anonymous CVS to synchronize.
Jeff
On Thursday, February 27, 2003, at 08:55 AM, Peter Bienstman wrote:
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> On Thursday 27 February 2003 14:55, JINLING HUANG wrote:
>> Hi, all,
>>
>> Thanks a lot for your suggestions. I updated my biopython to the CVS
>> version, but still had the same problem.
>>
>> I have attached a small input file for the test. The problem occurs
>> at
>> the 10th entry.
>>
>> Thanks again and best wishes,
>>
>> Jinling
>
> The problem is with locus tags containing dashes, like
>
> LOCUS dj-1beta 187 aa linear INV
> 13-NOV-2002
>
> Jeff (or someone else with CVS write access), could you please check
> in the
> following patch?
>
> RCS file:
> /home/repository/biopython/biopython/Bio/GenBank/genbank_format.py,v
> retrieving revision 1.26
> diff -r1.26 genbank_format.py
> 99c99
> < Martel.Re("[\w]+"))
> - ---
>> Martel.Re("[\w\-]+"))
>
>
> Kind regards,
>
> Peter
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