[BioPython] GenBank records again

Jeffrey Chang jchang at jeffchang.com
Thu Feb 27 10:09:02 EST 2003


Committed.  Thanks, Peter!

Jinling, please download the file 
biopython/Bio/GenBank/genbank_format.py from the CVS and replace the 
one currently installed with your Biopython.  Please wait 15 minutes, 
though, because I have just checked it in, and it takes some time for 
the anonymous CVS to synchronize.

Jeff


On Thursday, February 27, 2003, at 08:55 AM, Peter Bienstman wrote:

> -----BEGIN PGP SIGNED MESSAGE-----
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> On Thursday 27 February 2003 14:55, JINLING HUANG wrote:
>> Hi, all,
>>
>> Thanks a lot for your suggestions.  I updated my biopython to the CVS
>> version, but still had the same problem.
>>
>> I have attached a small input file for the test.  The problem occurs 
>> at
>> the 10th entry.
>>
>> Thanks again and best wishes,
>>
>> Jinling
>
> The problem is with locus tags containing dashes, like
>
> LOCUS       dj-1beta                 187 aa            linear   INV
> 13-NOV-2002
>
> Jeff (or someone else with CVS write access), could you please check 
> in the
> following patch?
>
> RCS file: 
> /home/repository/biopython/biopython/Bio/GenBank/genbank_format.py,v
> retrieving revision 1.26
> diff -r1.26 genbank_format.py
> 99c99
> <                      Martel.Re("[\w]+"))
> - ---
>>                      Martel.Re("[\w\-]+"))
>
>
> Kind regards,
>
> Peter
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