[BioPython] Helping out...

[Jeffrey Chang]

There's code to download both GenBank and PubMed ids.  A script that
will download the ids given accessions from a file should be trivial
(untested):

from Bio import GenBank
ids = [x.strip() for x in open("FILENAME")]
def print_rec(rec):
  print rec
GenBank.download_many(ids, print_rec)

Andrew Dalke has an EUtils package that might be helpful if you need
to do more sophisticated things.

Jeff


On Mon, Feb 10, 2003 at 05:25:12PM -0800, Sep Dadsetan wrote:
> Hey,
>     I wanted to know if anybody has written a module or script that 
> does batch retrieval from Entrez given a list of accession numbers from 
> a file?
> 
> Thanks!
> 
> Sep
> 
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