[BioPython] Creating a parser for Quantarray data?
Peter Wilkinson
pwilkinson at videotron.ca
Tue Aug 26 09:40:29 EDT 2003
Well I have just acquired a need for some expression format parsers like
QuantArray, gal, Iobion etc.
I have been looking through CVS for some, and I dont see any. Is it worth
creating a parser within the parser framework within biopython (Martel), or
shall I build a something separately.
These can be large files, and I would want to implement something that is
efficient.
How would Martel handle a 20M Record like a Quantarray file? When I was
parsing genomic Genbank files (Bacteria), the Genbank parser's performance
started to suffer ...
Peter W.
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