[BioPython] Plotting with Python

[Cayte]

Jython lets you code in python and use java for graphics.

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----- Original Message ----- 
From: "Michiel de Hoon" <mdehoon@ims.u-tokyo.ac.jp>
To: <biopython@biopython.org>
Sent: Saturday, April 06, 2002 11:00 PM
Subject: [BioPython] Plotting with Python


> I have been using python with C extension modules to do numerical 
> analysis of gene expression data (cDNA microarray). While python is 
> excellent for doing numerical analysis, the problem is that there does 
> not seem to be a good package for creating plots with Python, except for 
> Gist, which uses X Windows and does not run under Windows. The other 
> packages that I have found on the web do not support interactive work 
> (that is, as soon as a graphics window is opened, the python prompt is 
> not available until the window is closed). Commercial codes such as 
> matlab support such interactive work, and it would be nice if Python 
> could do the same. Does anybody have any suggestions on what to use for 
> scientific plotting with Python?
> Thanks -- Michiel.
> 
> -- 
> Michiel de Hoon, Postdoctoral Fellow
> University of Tokyo, Institute of Medical Science
> Human Genome Center
> 4-6-1 Shirokane-dai, Minato-ku
> Tokyo 108-8639
> Japan
> http://bonsai.ims.u-tokyo.ac.jp/~mdehoon
> 
> 
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