[BioPython] Blast results in XML

[Martin Sterman]

Do you require the parser source code to be in Python
or are you just looking for an XML parser?  As long
as the blast results are well formed XML, there are
plenty of parsers out there.  SAX for read only
or DOM for read/write.  You  need only write
a handler for an existing parser.  Don't want to
advertise anyone's parser in particular, so try

http://www.oasis-open.org/cover/publicSW.html

for a full set of links.

Martin Sterman
eXcelon Corp.

----- Original Message ----- 
From: "Oliver Hofmann" <o.hofmann@Smail.Uni-Koeln.de>
To: <biopython@biopython.org>
Sent: Friday, September 28, 2001 11:10 AM
Subject: [BioPython] Blast results in XML


> 'lo everyone!
> 
> 
> Just a quick question before I probably start writing one.. as of
> now, there is no parser for the XML blast results? Ie, all parsers
> in the BioPython project expect the results to be in regular
> flatfile format?
> 
> 
> Thanks a lot,
> 
> Oliver
> 
> 
> --
> Oliver Hofmann - University of Cologne (temporarily at deCode Iceland)
> PGP Fingerprint - 3B91 E308 2E5D D2A4 4E8D 633B F628 488D 8ECF 3893
> 
> Reality continues to ruin my live.
> -- Calvin
>  
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