[BioPython] about GenBank module

[Jeffrey Chang]

Hmmm, I'm having trouble duplicating this.  Mine imports fine.

>>> from Martel import *
>>> from Bio import GenBank
>>>

Have you ever installed a previous version of Biopython?  Is it possible
that it may be trying to import from an older version?  GenBank is new to
this version, and those other packages were in other ones.

Try importing something else and seeing if the file is where you expected
it to come from:
>>> from Bio import SwissProt
>>> print SwissProt.__file__
/home/jchang/lib/python2.0/site-packages/Bio/SwissProt/__init__.pyc
>>>

Other than that, check to see if there is a GenBank directory in your
biopython installation.  If you're on a unix-like system, it will be in a
path like:
/usr/local/lib/python2.0/site-packages/Bio

I'm not sure where Windows puts its stuff.

Please write back if you're still having problems.

Jeff




On Wed, 7 Mar 2001, [euc-kr] ±è¿Ï±Ô wrote:

> I've installed
>
> python2.0
> Martel0.5
> mxTextTools
> and biopython 1.0
>
> successfully, but I got ImportError always in importing GenBank module
> as follows :
>
> >>> from Martel import *
> >>> from Bio import GenBank
> Traceback (innermost last):
>   File "<pyshell#2>", line 1, in ?
>     from Bio import GenBank
> ImportError: cannot import name GenBank
>
> Other modules were imported with no problem :
>
> >>> from Bio import Blast
> >>> from Bio import Medline
> >>> from Bio import SCOP
> >>> from Bio import SeqlO
> ....
>
> Please Check the Genbank module and give me some advice.
> Quick advice will be most appreciated.
> thanks for reading.
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