[BioPython] Biopython 1.00a1 released
Jeffrey Chang
jchang@SMI.Stanford.EDU
Sun, 4 Mar 2001 11:32:22 -0800 (PST)
Hello everybody,
The 1.00a1 release of Biopython is ready for download. This release marks
two milestone in the package. First, it is now 1.00, which means it's
relatively feature complete. It has support for sequences & annotations,
alignments, substitution matrices, BLAST, ClustalW, ENZYME, FASTA
formatting, GenBank, GoBase, Medline, Prosite, Rebase, SCOP, SwissProt,
and UniGene. Second, it's the first non-developer's release, which means
it's now reasonable to expect people to download it and do work
immediately without having to mess around with the code. Please download
it at:
http://www.biopython.org/Download/
Since it's an alpha release, we do expect bugs to pop up occasionally. If
you notice one, please report to:
http://www.biopython.org/biopython-bugs/
As always, documentation is available at:
http://www.biopython.org/wiki/html/BioPython/BiopythonCode.html
What's new from 0.90d04:
Refactoring of modules. X/X.py moved to X/__init__.py.
Can search sequences for Prosite patterns at ExPASy
Can do BLAST searches against stable URL at NCBI
Prosite Pattern bug fixes
GenBank parser
Complete Seq and SeqFeatures framework
distutils cleanup
compile warning cleanups
support for UniGene
code for working with substitution matrices
Tools.MultiProc package for rudimentary multiprocessing stuff
The Biopython package has been developed by a consortium of volunteers.
Major contributors to the package include (in no particular order):
Brad Chapman
Kate Lindner
Andrew Dalke
Thomas Sicheritz Ponten
Iddo Friedberg
Jeffrey Chang
Enjoy!
Jeff