[BioPython] BLAST from inside python code?
Jeffrey Chang
jchang@SMI.Stanford.EDU
Thu, 1 Mar 2001 16:35:21 -0800 (PST)
There's a wrapper around blastpgp and blastall in
Bio/Blast/NCBIStandalone.py. You can use this to call a local copy of
blast (downloadable from NCBI) to generate results. Please let me know if
this wasn't what you were looking for.
Jeff
On Thu, 1 Mar 2001, Taylor, Deanne wrote:
> There's got to be a faster way of running blast from a python program than
> simply
> writing a script to externally call blast and parse the results, over and
> over (for big data sets).
> Anybody know of any BLAST wrapper for python?
>
> deanne
> _______________________________________________
> BioPython mailing list - BioPython@biopython.org
> http://biopython.org/mailman/listinfo/biopython
>