[BioPython] blastall - how do I pass optional arguments?
Jeffrey Chang
jchang@SMI.Stanford.EDU
Tue, 17 Jul 2001 06:35:27 -0700
blastall takes a **keywds argument that accepts arguments documented
in the docstring. To change the expectation, do something like:
>>> NCBIStandalone.blastall("blastall", "blastp", "nr", "myseqs",
>>>expectation=1E-10)
The expectation will get passed to blastall as the "-e" parameter.
Jeff
At 2:50 PM +0200 7/17/01, Sara wrote:
>I fail to see how additional arguments are passed to the
>NCBIStandalone.blastall method.
>I need a different expectation value . How could I pass this as an
>argument?
>
>Regards,
>
>Sara
>
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