[Biopython-dev] [Biopython (old issues only) - Bug #3009] (Closed) Check the FASTA m10 alignment parser works with FASTA36

[redmine at redmine.open-bio.org]

Issue #3009 has been updated by Peter Cock.

Status changed from New to Closed
% Done changed from 0 to 100

I lost track of this and don't have those failing examples to hand.

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Bug #3009: Check the FASTA m10 alignment parser works with FASTA36
https://redmine.open-bio.org/issues/3009#change-15414

* Author: Peter Cock
* Status: Closed
* Priority: Normal
* Assignee: Biopython Dev Mailing List
* Category: Main Distribution
* Target version: Not Applicable
* URL: 
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Bill Pearson has just announced the release of FASTA36:
http://faculty.virginia.edu/wrpearson/fasta/fasta36/

>From his email,
> This version is a major update from FASTA version 35.
> It's main new feature is the ability to report all
> statistically significant alignments between a query
> and library sequence (equivalent to BLAST's multiple
> HSPs).  All previous versions of the FASTA program
> reported only the best alignment between the query
> and library sequence, a serious shortcoming when
> comparing a query protein to a multi-exon gene or
> multi-domain protein.

We need to check the FASTA36 -m 10 output, add this to
our unit tests, and update our parser as required.



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