[Biopython-dev] [Biopython (old issues only) - Bug #2677] (Closed) BioSQL seqfeature enhancements

[redmine at redmine.open-bio.org]

Issue #2677 has been updated by Peter Cock.

Description updated
Status changed from New to Closed
% Done changed from 0 to 100

Most of this work seems to have been merged, or was not clearly defined in BioSQL itself.

I'm going to close it but would be happy to have new issues logged on GitHub for anything specific still not implemented.

----------------------------------------
Bug #2677: BioSQL seqfeature enhancements
https://redmine.open-bio.org/issues/2677#change-15407

* Author: Cymon J.
* Status: Closed
* Priority: Normal
* Assignee: Biopython Dev Mailing List
* Category: BioSQL
* Target version: Not Applicable
* URL: 
----------------------------------------
Cleaned-up (sub-)seqFeature locations, and strand. Added location_operator storage and test. Added remote location storage for sub-features, and test.

Ive used the "Sequence Keys" ontology for the location operator and stored loc op in the location_qualifier_value table - not sure this is right...

Patches attached.

---Files--------------------------------
BioSQL.patch (9.42 KB)
test_BioSQL_SeqIO.patch (4.48 KB)


-- 
You have received this notification because you have either subscribed to it, or are involved in it.
To change your notification preferences, please click here and login: http://redmine.open-bio.org
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.open-bio.org/pipermail/biopython-dev/attachments/20180705/72eba5c0/attachment-0001.html>